miRBase entry: hco-mir-5934

Stem-loop hco-mir-5934


Accession
MI0020095
Description
Haemonchus contortus hco-mir-5934 precursor miRNA


Sequence

ccuacucccagugcgaucccacugcgcuuuugauccgacuaacgagcuuccuuuucgUUAGUCUGAUCAGAAGCGUGGGgggagcuggggacugcucgaggc
.....(((((((....((((.((((((((((((((.((((((((((.......)))))))))).)))))))))))))).)))))))))))............

Structure
-------ccuac       gcga    a              c          cu 
            ucccagu    uccc cugcgcuuuugauc gacuaacgag  u
            |||||||    |||| |||||||||||||| ||||||||||  c
            ggggucg    aggg GGUGCGAAGACUAG CUGAUUgcuu  c
cggagcucguca       ----    G              U          uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5934

Accession MIMAT0023426
Description Haemonchus contortus hco-miR-5934 mature miRNA
Sequence 58 - UUAGUCUGAUCAGAAGCGUGGG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4