Stem-loop hco-mir-5918b

Accession

MI0020090

Description

Haemonchus contortus hco-mir-5918b precursor miRNA

Gene family

MIPF0001395; mir-5918

Sequence

ccccuucgcugauaggauaacggguagcacgauugugagacaagcuugcgcagaagcUCGCUCUACAUCGUGUUACCCAaugucucaucgccguuggacccuu
..((..((.((((.(((((..((((((((((((.(((((.(.(((((......))))).)))).))))))))))))))..))))).)))).))..))......

Structure

----cc  uu  c    a     ac            u  -   a a     gc 
      cc  cg ugau ggaua  ggguagcacgau gu gag c agcuu  g
      ||  || |||| |||||  |||||||||||| || ||| | |||||   
      gg  gc gcua ucugu  CCCAUUGUGCUA CA CUC G Ucgaa  c
uuccca  uu  c    c     aA            -  U   - C     ga 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5918b

• Accession: MIMAT0023421
• Description: Haemonchus contortus hco-miR-5918b mature miRNA
• Sequence: 58 - UCGCUCUACAUCGUGUUACCCA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4