Stem-loop hco-mir-5890f

Accession

MI0020079

Description

Haemonchus contortus hco-mir-5890f precursor miRNA

Gene family

MIPF0001378; mir-5890

Sequence

uuuaugcggcagcAUAGGACUGAACUGUGGGAGGAcuaaugugauuCUACCCCUUUCCAUUCUUAUGCugcuuuggaggugaauucacaacuuucccgcuaguauccacc
.......((((((((((((.((....(.((((((((......).)))).))))....)).))))))))))))((((.((.(((.........))))).))))........

Structure

-------------------------------uuuaugc            C  AACU U   -    - ua 
                                      ggcagcAUAGGA UG    G GGG AGGA c  a
                                      |||||||||||| ||    | ||| |||| |   
                                      ucguCGUAUUCU AC    C CCC UCuu g  u
ccaccuaugaucgcccuuucaacacuuaaguggagguu            U  CUUU -   A    a ug 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5890f-5p

• Accession: MIMAT0023409
• Description: Haemonchus contortus hco-miR-5890f-5p mature miRNA
• Sequence: 14 - AUAGGACUGAACUGUGGGAGGA - 35
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5890f-3p

• Accession: MIMAT0023410
• Description: Haemonchus contortus hco-miR-5890f-3p mature miRNA
• Sequence: 47 - CUACCCCUUUCCAUUCUUAUGC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4