Stem-loop hco-mir-5924-1

Accession

MI0020074

Description

Haemonchus contortus hco-mir-5924-1 precursor miRNA

Gene family

MIPF0001523; mir-5924

Sequence

aagguccguuuaugagauauguCAACACAGCCAGAUGCAGUAGuucuuuucgucacAACUGCUUCCAGCUGUGCUGACAUaucucauaaaagagggccucau
.((((((.((((((((((((((((.((((((..((.(((((.((..........)).))))).))..)))))).))))))))))))))))...))))))...

Structure

--a      --g                A      CA  U     A  ucuu 
   aggucc   uuuaugagauauguCA CACAGC  GA GCAGU Gu    u
   ||||||   |||||||||||||||| ||||||  || ||||| ||     
   uccggg   aaauacucuaUACAGU GUGUCG  CU CGUCA ca    u
uac      aga                C      AC  U     A  cugc 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5924-5p

• Accession: MIMAT0023403
• Description: Haemonchus contortus hco-miR-5924-5p mature miRNA
• Sequence: 23 - CAACACAGCCAGAUGCAGUAG - 43
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5924-3p

• Accession: MIMAT0023404
• Description: Haemonchus contortus hco-miR-5924-3p mature miRNA
• Sequence: 57 - AACUGCUUCCAGCUGUGCUGACAU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4