Stem-loop hco-mir-5911c

Accession

MI0020068

Description

Haemonchus contortus hco-mir-5911c precursor miRNA

Gene family

MIPF0001407; mir-5911

Sequence

aaugauguugUGAGGCUGACUUGCUUAGGAGCUuguucguguuccuaagcucuucacccuuacagacaccuucagcauuaga
..(((((((((((((.(((...((((((((((........))))))))))...))).)))))))..........))))))..

Structure

aa      ----------       C   CUU          Uug 
  ugaugu          ugUGAGG UGA   GCUUAGGAGC   u
  ||||||          ||||||| |||   ||||||||||    
  auuacg          acauucc acu   cgaauccuug   u
ag      acuuccacag       c   ucu          ugc 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5911c

• Accession: MIMAT0023397
• Description: Haemonchus contortus hco-miR-5911c mature miRNA
• Sequence: 11 - UGAGGCUGACUUGCUUAGGAGCU - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4