miRBase entry: hco-mir-5920

Stem-loop hco-mir-5920


Accession
MI0020066
Description
Haemonchus contortus hco-mir-5920 precursor miRNA


Sequence

gguguacaggGUUUUGUCAUUCGUAUUGUGAAGCgacaauaugcuuucaucguaugcgaugccaaaauccagaccca
((.((.(.((((((((.(((((((((.(((((((........)).))))).))))).)))).)))))))).))))).

Structure
-  u  a a        U    -     U     -  gac 
 gg gu c ggGUUUUG CAUU CGUAU GUGAA GC   a
 || || | |||||||| |||| ||||| ||||| ||    
 cc ca g ccuaaaac guag guaug uacuu cg   a
a  -  - a        c    c     c     u  uau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5920

Accession MIMAT0023394
Description Haemonchus contortus hco-miR-5920 mature miRNA
Sequence 11 - GUUUUGUCAUUCGUAUUGUGAAGC - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4