miRBase entry: hco-mir-5919

Stem-loop hco-mir-5919


Accession
MI0020064
Description
Haemonchus contortus hco-mir-5919 precursor miRNA


Sequence

cgcgacaguucaacuccucaaaccggugccaaaagccccauuaugagcggGUUUGGUUGCCGUUUUGAGGUguugacgagc
.((....((.((((.(((((((.(((((((((..(((((.......).)))))))).))))).))))))).))))))..))

Structure
c  gaca  u    u       c     -    aa    - au 
 gc    gu caac ccucaaa cggug ccaa  gccc c  u
 ||    || |||| ||||||| ||||| ||||  |||| |  a
 cg    ca guug GGAGUUU GCCGU GGUU  UGgg g  u
-  --ag  -    U       U     U    --    c ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5919

Accession MIMAT0023392
Description Haemonchus contortus hco-miR-5919 mature miRNA
Sequence 51 - GUUUGGUUGCCGUUUUGAGGU - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4