miRBase entry: hco-mir-5916

Stem-loop hco-mir-5916


Accession
MI0020057
Description
Haemonchus contortus hco-mir-5916 precursor miRNA


Sequence

agcuauaacuaaucuuuuugaugagauguucuguccuaaucuacagcuggGCAGACCAUCUGAUCAGAGAGAUuaguuacggc
.(((.(((((((((((((((((.(((((.(((((((............))))))).))))).))))))))))))))))).)))

Structure
a   a                 g     u       uaauc 
 gcu uaacuaaucuuuuugau agaug ucugucc     u
 ||| ||||||||||||||||| ||||| |||||||      
 cgg auugauUAGAGAGACUA UCUAC AGACGgg     a
-   c                 G     C       ucgac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5916

Accession MIMAT0023385
Description Haemonchus contortus hco-miR-5916 mature miRNA
Sequence 51 - GCAGACCAUCUGAUCAGAGAGAU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4