miRBase entry: hco-mir-5890c

Stem-loop hco-mir-5890c


Accession
MI0020050
Description
Haemonchus contortus hco-mir-5890c precursor miRNA
Gene family
MIPF0001378; mir-5890


Sequence

uaugcggcagCAUAUAACUGAACUGUGGGAGgacucauaugauucuaccccucuucauuuuuaugcugcuucggag
...(.(((((((((.((.((((..(.(((.(((.((....)).))).))))..)))).)).))))))))).)....

Structure
-uau c         U  C    CU U   A   c  a 
    g ggcagCAUA AA UGAA  G GGG Gga uc u
    | ||||||||| || ||||  | ||| ||| ||  
    c ucgucguau uu acuu  c ccc ucu ag a
gagg u         u  u    cu -   a   u  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5890c

Accession MIMAT0023378
Description Haemonchus contortus hco-miR-5890c mature miRNA
Sequence 11 - CAUAUAACUGAACUGUGGGAG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4