miRBase entry: hco-mir-5890b

Stem-loop hco-mir-5890b


Accession
MI0020043
Description
Haemonchus contortus hco-mir-5890b precursor miRNA
Gene family
MIPF0001378; mir-5890


Sequence

uaugcggcagCAUAGGACUGAAUUGUGGGAGgacuuauaugauccUACCCCUUUUCAUUUUUAUGCugcuuuggag
.....((((((((((((.((((..(.((((((((......).)))).))))..)))).))))))))))))......

Structure
-uaugc            C    UU U   -    - uu 
      ggcagCAUAGGA UGAA  G GGG AGga c  a
      |||||||||||| ||||  | ||| |||| |   
      ucguCGUAUUUU ACUU  C CCC Uccu g  u
gagguu            U    UU -   A    a ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5890b-5p

Accession MIMAT0023370
Description Haemonchus contortus hco-miR-5890b-5p mature miRNA
Sequence 11 - CAUAGGACUGAAUUGUGGGAG - 31
Evidence experimental
Illumina [1]

Mature hco-miR-5890b-3p

Accession MIMAT0023371
Description Haemonchus contortus hco-miR-5890b-3p mature miRNA
Sequence 46 - UACCCCUUUUCAUUUUUAUGC - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4