miRBase entry: hco-mir-71

Stem-loop hco-mir-71


Accession
MI0020032
Description
Haemonchus contortus hco-mir-71 precursor miRNA
Gene family
MIPF0000278; mir-71

Literature search
2 open access papers mention hco-mir-71
(5 sentences)

Sequence

ugccagccggugcauggagagagugcgaguaguucugagggUGAAAGACAUGGGUAGUGAGACgcuuuguucuggccguaucacuauucuguuuuucgcccuuugaaucuacgcaauaugca
.(((....)))((((.......))))..(((((((.((((((((((((((.(((((((((.(((((.......)).))).))))))))))))))))))))))).))).))))(((...))).

Structure
ugccagccggugcauggagagagugcga    -   u              U         G   -  uu 
                            guag uuc gagggUGAAAGACA GGGUAGUGA ACg cu  g
                            |||| ||| |||||||||||||| ||||||||| ||| ||  u
                            cauc aag uucccgcuuuuugu cuuaucacu ugc gg  u
------------------acguauaacg    u   u              -         a   c  uc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-71

Accession MIMAT0023358
Description Haemonchus contortus hco-miR-71 mature miRNA
Sequence 42 - UGAAAGACAUGGGUAGUGAGAC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4