Stem-loop hco-mir-59

Accession

MI0020030

Description

Haemonchus contortus hco-mir-59 precursor miRNA

Sequence

caccagccagaccugcucggguucgucaagaguacgauccggaacugacuucggauuUCGAAUCGUCACUCUUGAUGCUCucguguacaucugagcccugccuagu
.....((((((..(((.((((..(((((((((((((((.((((((((....))).))))).))))).))))))))))..)))).)))..)))).))..........

Structure

-----cacca  -    cc   u    uu          -     c     -   a 
          gc caga  ugc cggg  cgucaagagu acgau cggaa cug c
          || ||||  ||| ||||  |||||||||| ||||| ||||| |||  
          cg gucu  aug gcuC  GUAGUUCUCA UGCUA GCUuu ggc u
ugauccgucc  a    ac   u    UC          C     A     a   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-59

• Accession: MIMAT0023356
• Description: Haemonchus contortus hco-miR-59 mature miRNA
• Sequence: 58 - UCGAAUCGUCACUCUUGAUGCUC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4