miRBase entry: hco-mir-83

Stem-loop hco-mir-83


Accession
MI0020029
Description
Haemonchus contortus hco-mir-83 precursor miRNA
Gene family
MIPF0000251; mir-83

Literature search
1 open access papers mention hco-mir-83
(1 sentences)

Sequence

cccucuauugaugagugauaguccugaauuuauuugcgagcuggacaaugaaaagaucUAGCACCAUGUAAAUUCAGCAuuugagcucgucucacuugguuucc
.((......(((((((...(((.((((((((((.((.(.(((((((........).)))))).))).)))))))))).)))...)))))))......)).....

Structure
----c  ucuauu       gau   c          u  c a      - aau 
     cc      gaugagu   agu cugaauuuau ug g gcugga c   g
     ||      |||||||   ||| |||||||||| || | |||||| |    
     gg      cugcucg   uuA GACUUAAAUG AC C CGAUcu g   a
ccuuu  uucacu       agu   C          U  - A      a aaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-83

Accession MIMAT0023355
Description Haemonchus contortus hco-miR-83 mature miRNA
Sequence 59 - UAGCACCAUGUAAAUUCAGCA - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4