Stem-loop hco-mir-5900

Accession

MI0020021

Description

Haemonchus contortus hco-mir-5900 precursor miRNA

Sequence

ggguagaaugaaacccaaugcaugugguagcagagucacuuggauaaaaucccaguauuggccuagAAUUCUAUCCAAGUGACUCUGCuaccaugcauguccccgcauuc
((((........)))).(((((..((((((((((((((((((((((.(((((((....)))....).))).)))))))))))))))))))))))))))............

Structure

ggguagaaugaaaccca     ug                      a   - ----   g 
                 augca  ugguagcagagucacuuggaua aau c    cca u
                 |||||  |||||||||||||||||||||| ||| |    |||  
                 uacgu  accauCGUCUCAGUGAACCUAU UUA g    ggu a
-----cuuacgccccug     --                      C   A aucc   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5900

• Accession: MIMAT0023346
• Description: Haemonchus contortus hco-miR-5900 mature miRNA
• Sequence: 67 - AAUUCUAUCCAAGUGACUCUGC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4