miRBase entry: hco-mir-45

Stem-loop hco-mir-45


Accession
MI0020015
Description
Haemonchus contortus hco-mir-45 precursor miRNA
Gene family
MIPF0000132; mir-44

Literature search
2 open access papers mention hco-mir-45
(2 sentences)

Sequence

caccucagucaccauuguccgaucuggauguuucucugagucauacucguugugauaUGACUAGAGACACAUUCAGCUuggcuacgugaccauaucguggcua
(((....(((((....(.((((.((((((((.(((((.(((((((.((.....)))))))))))))).)))))))).)))))...)))))......)))....

Structure
----   --cuca     cauu u    u        u     g       c  g 
    cac      gucac    g ccga cuggaugu ucucu agucaua uc u
    |||      |||||    | |||| |||||||| ||||| ||||||| || u
    gug      cagug    c gguU GACUUACA AGAGA UCAGUau ag g
aucg   cuauac     -cau -    C        C     -       -  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-45

Accession MIMAT0023339
Description Haemonchus contortus hco-miR-45 mature miRNA
Sequence 58 - UGACUAGAGACACAUUCAGCU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4