miRBase entry: hco-mir-43

Stem-loop hco-mir-43


Accession
MI0020012
Description
Haemonchus contortus hco-mir-43 precursor miRNA

Literature search
1 open access papers mention hco-mir-43
(12 sentences)

Sequence

acuuauucgcugaucuucuugcaacccgauguagcuguuauacugccucguuguaagUAUCACAGUGUCAUUGGGUCGCAagcgaucucagcuugcauugaccc
........(((((..(((((((.((((((((..(((((.(((((((......)).))))).)))))..)))))))).))))).))..)))))............

Structure
----acuuauuc     uc  -     a        ua     u     -  cu 
            gcuga  uu cuugc acccgaug  gcugu auacu gc  c
            |||||  || ||||| ||||||||  ||||| ||||| ||   
            cgacu  ag gaACG UGGGUUAC  UGACA UAUga ug  g
cccaguuacguu     cu  c     C        UG     C     a  uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-43

Accession MIMAT0023336
Description Haemonchus contortus hco-miR-43 mature miRNA
Sequence 58 - UAUCACAGUGUCAUUGGGUCGCA - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4