miRBase entry: hco-mir-259

Stem-loop hco-mir-259


Accession
MI0020009
Description
Haemonchus contortus hco-mir-259 precursor miRNA


Sequence

cagcauacugucuucgccgcugUAAUCUCAUCCGAAUCUGUUGCAgaaacgaagcaacgaauucgacugagauuggggcguugcaagacauaucaugaaa
((..(((.((((((.((((((.((((((((..(((((.((((((.........)))))).)))))..)))))))).))))..)))))))))))..))...

Structure
---  gc   c      c  --    g        UC     C      Aga 
   ca  aua ugucuu gc  cgcu UAAUCUCA  CGAAU UGUUGC   a
   ||  ||| |||||| ||  |||| ||||||||  ||||| ||||||   a
   gu  uau acagaa cg  gcgg guuagagu  gcuua gcaacg   c
aaa  ac   -      -  uu    g        ca     a      aag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-259

Accession MIMAT0023333
Description Haemonchus contortus hco-miR-259 mature miRNA
Sequence 23 - UAAUCUCAUCCGAAUCUGUUGCA - 45
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4