miRBase entry: hco-mir-50

Stem-loop hco-mir-50


Accession
MI0020005
Description
Haemonchus contortus hco-mir-50 precursor miRNA
Gene family
MIPF0000266; mir-50

Literature search
2 open access papers mention hco-mir-50
(12 sentences)

Sequence

uuccacaauggcugcuuuagcucUGAUAUGUCUGGUAUUCUUGGGuucagugauaaccagaacuauuagacauaucgaagaucgagcgugccaccacuacugcug
........(((((((((...((.((((((((((((((((((.((............)))))).)))))))))))))).))...))))).))))............

Structure
----uuccacaa    -     uag  c              -    U  Guuca 
            uggc ugcuu   cu UGAUAUGUCUGGUA UUCU GG     g
            |||| |||||   || |||||||||||||| |||| ||      
            accg gcgag   ga gcuauacagauuau aaga cc     u
gucgucaucacc    u     cua  a              c    -  aauag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-50

Accession MIMAT0023329
Description Haemonchus contortus hco-miR-50 mature miRNA
Sequence 24 - UGAUAUGUCUGGUAUUCUUGGG - 45
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4