Stem-loop hco-mir-46

Accession

MI0020003

Description

Haemonchus contortus hco-mir-46 precursor miRNA

Gene family

MIPF0000087; mir-46

Sequence

ugccauguggauacgguagcugaagagagccguccguugacaguucacuauggacgcUGUCAUGGAGUCGCUCUCUUCAgacuccuagauccgugaauuugcccac
........((((..((.(((((((((((((..(((((.((((((((......)).)))))))))))...))))))))))).)).))..))))(((........)))

Structure

------ugccaugu    ac  u  -           -cg     u      -  ac 
              ggau  gg ag cugaagagagc   uccgu gacagu uc  u
              ||||  || || |||||||||||   ||||| |||||| ||   
              ccua  uc uc gACUUCUCUCG   AGGUA CUGUcg ag  a
cacccguuuaagug    ga  c  a           CUG     -      c  gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-46

• Accession: MIMAT0023327
• Description: Haemonchus contortus hco-miR-46 mature miRNA
• Sequence: 58 - UGUCAUGGAGUCGCUCUCUUCA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4