Stem-loop hco-mir-5890a

Accession

MI0020001

Description

Haemonchus contortus hco-mir-5890a precursor miRNA

Gene family

MIPF0001378; mir-5890

Sequence

agucacgcauuuaugcggcagcauaggaccgaauugugggagaacuucuaugauucUACCCCUUUUCAUUUUUAUGCugcucuggagguggauucacaacuuuaucgcua
.....((((....))))(((((((((((..(((..(.((((((((......).)))).))))..)))..)))))))))))..(((.((((((........)))))).)))

Structure

-------------agucacgcauuuaugcg           cc   uu u   -    - uu 
                              gcagcauagga  gaa  g ggg agaa c  c
                              |||||||||||  |||  | ||| |||| |   
                              cguCGUAUUUU  CUU  C CCC Ucuu g  u
aucgcuauuucaacacuuagguggaggucu           UA   UU -   A    a ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5890a

• Accession: MIMAT0023325
• Description: Haemonchus contortus hco-miR-5890a mature miRNA
• Sequence: 57 - UACCCCUUUUCAUUUUUAUGC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4