miRBase entry: hco-mir-63a

Stem-loop hco-mir-63a


Accession
MI0019994
Description
Haemonchus contortus hco-mir-63a precursor miRNA

Literature search
1 open access papers mention hco-mir-63a
(1 sentences)

Sequence

cuuguauucuucugaugaucauaccuguucgacgggagucaucguccuuaugguacAAUGACACUGUUGCGAACUGGGAUggucaaaggcauucguuccgcaua
...........((..((((((..((.(((((((((..(((((.((((....)).)).))))).))))..))))).))..))))))..))...............

Structure
----cuuguauucuu  ga      ua  u     --    ga     c  -  u 
               cu  ugauca  cc guucg  acgg  gucau gu cc u
               ||  ||||||  || |||||  ||||  ||||| || ||  
               gg  acuggU  GG CAAGC  UGUC  CAGUA ca gg a
auacgccuugcuuac  aa      AG  U     GU    -A     A  u  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-63a

Accession MIMAT0023318
Description Haemonchus contortus hco-miR-63a mature miRNA
Sequence 57 - AAUGACACUGUUGCGAACUGGGAU - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4