miRBase entry: hco-mir-133

Stem-loop hco-mir-133


Accession
MI0019993
Description
Haemonchus contortus hco-mir-133 precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

ggagaagcuguuuuucgcguaugcugguugcagcugacccaauuguuagucaacgaucaAUUGGUCCCCUCCAACCAGCUAAcgagaaaaucguucaauucucc
((((((..((.(((((.(((..((((((((.((..((((.(((((...(....)...)))))))))..)).))))))))..))).))))).)).....))))))

Structure
      ---gc  u     g   au        c  cu    c     uua u 
ggagaa     ug uuuuc cgu  gcugguug ag  gacc aauug   g c
||||||     || ||||| |||  |||||||| ||  |||| |||||   |  
ccucuu     gc aaaag gcA  CGACCAAC UC  CUGG UUAac   c a
      aacuu  u     a   AU        C  CC    -     uag a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-133

Accession MIMAT0023317
Description Haemonchus contortus hco-miR-133 mature miRNA
Sequence 60 - AUUGGUCCCCUCCAACCAGCUAA - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4