Stem-loop sequence osa-MIR5827

Accession

MI0019846 (change log)

Description

Oryza sativa miR5827 stem-loop

Literature search

1 open access papers mention osa-MIR5827
(1 sentences)

Stem-loop

         cac          a           cua   - a     uc   a   -caauu  agcccaccggugaacuccuccaccucu 
5' uauuuu   cuuuguugca uuuggacuacc   aac c cuucu  agc cau      cc                           u
   ||||||   |||||||||| |||||||||||   ||| | |||||  ||| |||      ||                            
3' auaaaa   gaaacaacgu aaaccuggugg   uug g gaagg  ucg gua      gg                           u
         aau          g           -ag   a a     ga   -   cagacc  agaggaggucguuucuauacuuagacg 

Deep sequencing

7 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr4: 30081902-30082077 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019846

Mature sequence osa-miR5827

• Accession: MIMAT0023301
• Sequence: 11 - uuuguugcaauuuggacuacc - 31
• Deep sequencing: 5 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage" Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ Plant Cell. 23:4185-4207(2011).