miRBase entry: osa-MIR5823

Stem-loop osa-MIR5823


Accession
MI0019841
Description
Oryza sativa osa-MIR5823 precursor miRNA


Sequence

2 reads, 1 reads per million, 2 experiments
uguuugaauugguggggcuuaggcuuaaugccuuuggaugggcuauaaauggaauuaaaguucccacuaucugAAGGAAUUGGGUCUAAUCUCUUCCuauccaaaca
((((((.((.((.((((.(((((((((((.(((((((((((.........(((((....)))))..))))))))))).))))))))))).)))).)).)).))))))

Structure
      a  u  u    c           g           gcuauaaau     u 
uguuug au gg gggg uuaggcuuaau ccuuuggaugg         ggaau a
|||||| || || |||| ||||||||||| |||||||||||         |||||  
acaaac ua CC UCUC AAUCUGGGUUA GGAAgucuauc         ccuug a
      c  u  U    U           A           -------ac     a 


Annotation confidence Not enough data
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Genome context
Chr11: 21506677-21506783 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR5823
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR5823

Accession MIMAT0023296
Description Oryza sativa osa-miR5823 mature miRNA
Sequence 74 - AAGGAAUUGGGUCUAAUCUCUUCC - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207