miRBase entry: osa-MIR5816

Stem-loop osa-MIR5816


Accession
MI0019833
Description
Oryza sativa osa-MIR5816 precursor miRNA


Sequence

19 reads, 17 reads per million, 2 experiments
ucUAGGAGUGUUUGUAGGAGCGCCACgugaaaauguaggagcguauauaggaaguuuaauagacuuuuaguauauaauagauuucuaggauuucucuaauuuauuugagagucacguagcguuguaaaagcauuuguaga
((((.((((((((...(.(((((.((((((...(.(((((((((((((.((((((((...)))))))).))))))....).)))))).)..(((((..........))))))))))).))))).)..)))))))).))))

Structure
    G        GUA G     C      -------------------aaa g      - ----      a        a 
ucUA GAGUGUUU   G AGCGC ACguga                      u uaggag c    guauau ggaaguuu  
|||| ||||||||   | ||||| ||||||                      | |||||| |    |||||| |||||||| a
agau uuuacgaa   u uugcg ugcacu                      g aucuuu g    uauaug uuuucaga  
    g        -aa g     a      gagaguuuauuuaaucucuuua g      a auaa      a        u 


Annotation confidence Not enough data
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Genome context
Chr9: 11583948-11584087 [-]

Database links

Mature osa-miR5816

Accession MIMAT0023288
Description Oryza sativa osa-miR5816 mature miRNA
Sequence 3 - UAGGAGUGUUUGUAGGAGCGCCAC - 26
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207