miRBase entry: osa-MIR5810

Stem-loop osa-MIR5810


Accession
MI0019827
Description
Oryza sativa osa-MIR5810 precursor miRNA

Literature search
1 open access papers mention osa-MIR5810
(1 sentences)

Sequence

gugcuucauaaaugcuuuucuccacuuaggguuccguuagcaacccuccauuaaguacuauaggaugaacagugcauuuaucggugugggauggACGGAACCCUAAUGGCGAUGGCAUuuaugggaca
.((.((((((((((((..((.(((.(((((((((((((..((.(((.((..((((((((...........)))))..)))..))...))).)))))))))))))))))).)).)))))))))))).))

Structure
g  c            uu  u   c             ag  a   --u  au   --     auag 
 ug uucauaaaugcu  uc cca uuaggguuccguu  ca ccc   cc  uaa  guacu    g
 || ||||||||||||  || ||| |||||||||||||  || |||   ||  |||  |||||    a
 ac ggguauuUACGG  AG GGU AAUCCCAAGGCAg  gu ggg   gg  auu  cguga    u
-  a            -U  C   -             --  a   ugu  cu   ua     caag 


Annotation confidence Not enough data
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Genome context
Chr12: 7333292-7333419 [-]

Database links

Mature osa-miR5810

Accession MIMAT0023282
Description Oryza sativa osa-miR5810 mature miRNA
Sequence 95 - ACGGAACCCUAAUGGCGAUGGCAU - 118
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207