miRBase entry: osa-MIR5809

Stem-loop osa-MIR5809


Accession
MI0019826
Description
Oryza sativa osa-MIR5809 precursor miRNA

Literature search
2 open access papers mention osa-MIR5809
(2 sentences)

Sequence

7 reads, 10 reads per million, 2 experiments
guaaacgcugguagcagcggcgacgagaauagauggcgUCGUCGCCGGCGACCACAGCacaac
......((((....(..(((((((((............)))))))))..)....)))).....

Structure
guaaac    guag ag         gaaua 
      gcug    c  cggcgacga     g
      ||||    |  |||||||||      
      CGAC    G  GCCGCUGCU     a
-caaca    ACCA CG         gcggu 


Annotation confidence Not enough data
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Genome context
Chr4: 23527607-23527669 [-]

Database links

Mature osa-miR5809

Accession MIMAT0023281
Description Oryza sativa osa-miR5809 mature miRNA
Sequence 39 - UCGUCGCCGGCGACCACAGC - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207