Stem-loop sequence osa-MIR812u

Accession

MI0019818 (change log)

Description

Oryza sativa miR812u stem-loop

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812u
(15 sentences)

Stem-loop

   u          -       a    aaaa    a  cc               a    -auuu      uuuuau      uauuuuuauuauuaugagauaauaagaca 
5'  guuuuauuuu aagugua ccau    uuuc ug  caauuuugaucguuc ucuu     ggauuu      aauuaa                             u
    |||||||||| ||||||| ||||    |||| ||  ||||||||||||||| ||||     ||||||      ||||||                              
3'  caggguaaaa uucacgu ggua    aagg ac  guugaaacuggcagg agaa     uuugaa      uuaauu                             g
   a          a       c    cuaa    c  ua               c    aauuu      -uuuuu      uuugcauucaauguuuauuucauugauaa 

Deep sequencing

1847 reads, 400 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr11: 8663581-8663797 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019818

Mature sequence osa-miR812u

• Accession: MIMAT0023273
• Sequence: 184 - acggaaaaucauggcugcacuuaa - 207
• Deep sequencing: 747 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage" Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ Plant Cell. 23:4185-4207(2011).