miRBase entry: gma-MIR2606b

Stem-loop gma-MIR2606b


Accession
MI0019795
Description
Glycine max gma-MIR2606b precursor miRNA
Gene family
MIPF0000888; MIR2606


Sequence

aaagcuuauauacaguuccuuagguucuuuggugcucuucuucaucaauuagaaucgaaguuucaccucaauaaucucuuaauaaagguuugcauuaaagaucaacauaaauuaccgaguugaaauuccaauuuugauugaagaauagcaccAAAAGCACUUAAGGAACGGUAucuaaguuuc
.(((((((.((((.(((((((((((.((((((((((.(((((((...((((((((.(.(((((((.(((..((((...(((.....(((((.......)))))....)))))))..))).))))))).).))))))))))))))).)))))).)))).))))))))))).)))).))))))).

Structure
a       u    a           u    -      c       uca        c a       c   aa    cuc   auaaa     gc 
 aagcuua auac guuccuuaggu cuuu ggugcu uucuuca   auuagaau g aguuuca cuc  uaau   uua     gguuu  a
 ||||||| |||| ||||||||||| |||| |||||| |||||||   |||||||| | ||||||| |||  ||||   |||     |||||  u
 uuugaau uAUG CAAGGAAUUCA GAAA ccacga aagaagu   uaguuuua c uuaaagu gag  auua   aau     cuaga  u
c       c    G           C    A      u       ---        a c       u   cc    ---   -acaa     aa 


Annotation confidence Not enough data
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Genome context
KQ474241.1: 6816-6998 [-]

Database links

Mature gma-miR2606b

Accession MIMAT0023250
Description Glycine max gma-miR2606b mature miRNA
Sequence 153 - AAAAGCACUUAAGGAACGGUA - 173
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553