miRBase entry: gma-MIR5674b

Stem-loop gma-MIR5674b


Accession
MI0019793
Description
Glycine max gma-MIR5674b precursor miRNA
Gene family
MIPF0001447; MIR5674

Literature search
2 open access papers mention gma-MIR5674b
(2 sentences)

Sequence

cacuuggguugaugauuuucaauacgauuucauuuaagaaguuaguugcuucuuucagcuuaccaacaaugaagccacacaaucaagaauuacaaguggcaacauuaacaaaaaucccuuugacaaccauuuuaggaaaaaaaaccauacaaguuuauguuuacauaaagucaaUAAUUGUGUUGUACAUUAUCAcauuagaguc
.((((.((((((((((...((((((((((......(((((((.....))))))).............((((..(((((.................)))))..)))).............(((((..((......)).................((((((....))))))))))).))))))))))...))))))).))).)))).

Structure
c    g   -       uuu          -------------------------------ucauuuaagaaguuaguugcuucuuucagcuuaccaac    aa     acaauca 
 acuu ggu ugaugau   caauacgauu                                                                     aaug  gccac       a
 |||| ||| |||||||   ||||||||||                                                                     ||||  |||||       g
 ugag uua ACUAUUA   GUUGUGUUAA                                                                     uuac  cggug       a
c    a   c       CAU          Uaacugaaauacauuuguauuugaacauaccaaaaaaaaggauuuuaccaacaguuucccuaaaaacaa    aa     aacauua 


Annotation confidence Not enough data
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Genome context
chr9: 40101457-40101661 [+]

Database links

Mature gma-miR5674b

Accession MIMAT0023248
Description Glycine max gma-miR5674b mature miRNA
Sequence 175 - UAAUUGUGUUGUACAUUAUCA - 195
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553