miRBase entry: gma-MIR530e

Stem-loop gma-MIR530e


Accession
MI0019754
Description
Glycine max gma-MIR530e precursor miRNA
Gene family
MIPF0000521; MIR530

Literature search
3 open access papers mention gma-MIR530e
(4 sentences)

Sequence

uugaugccgauauguugccuuuaucUGCAUUUGCACCUGCACUUUAaguacucaguuucucugugacauauaaauaauauaacuaugucaguugaggacugaagagaucaauauauuauuauauaauaugggaauagagggaccgagaacgaggugcaggugcaucugcaggugaaugccauauuggauuauuggcc
.((((.((((((((..((.((((((((((..((((((((((((((..((.(((.((((((((((..(((((.(((((((((......((((((...)))))).........))))))))).....)))))...)))))))))).))).))))))))))))))))..)))))))))).))))))))))))))......

Structure
-----u    g        uu  c          UU              Aa  a   a          -ga     ----a         ---acuaug      g 
      ugau ccgauaug  gc uuuaucUGCA  UGCACCUGCACUUU  gu cuc guuucucugu   cauau     aauaauaua         ucaguu  
      |||| ||||||||  || ||||||||||  ||||||||||||||  || ||| ||||||||||   |||||     |||||||||         |||||| a
      auua gguuauac  cg aaguggacgu  acguggacguggag  ca gag cagggagaua   guaua     uuauuauau         agucag  
ccgguu    -        --  u          cu              --  a   c          agg     auaua         aacuagaga      g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr13: 41764574-41764770 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR530e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR530e

Accession MIMAT0023209
Description Glycine max gma-miR530e mature miRNA
Sequence 26 - UGCAUUUGCACCUGCACUUUA - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553