miRBase entry: gma-MIR828b

Stem-loop gma-MIR828b


Accession
MI0019743
Description
Glycine max gma-MIR828b precursor miRNA
Gene family
MIPF0000544; MIR828

Literature search
8 open access papers mention gma-MIR828b
(21 sentences)

Sequence

uuguaauguuUCUUGCUCAAAUGAGUAUUCCAaccacagucacauuuggcaugaaugugugccacuguccccaaaggcugagaugcucauuugagcaagcaauguuaaaa
...(((((((.((((((((((((((((((.((.((((((((((((((.....)))))))....))))).......)).)).)))))))))))))))))).)))))))...

Structure
uug       U                  C  a  -------     ----       g 
   uaauguu CUUGCUCAAAUGAGUAUU CA cc       acagu    cacauuu g
   ||||||| |||||||||||||||||| || ||       |||||    ||||||| c
   auuguaa gaacgaguuuacucguag gu gg       uguca    guguaag a
aaa       c                  a  c  aaacccc     ccgu       u 


Annotation confidence Not enough data
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Genome context
chr12: 3219162-3219271 [+]

Database links

Mature gma-miR828b

Accession MIMAT0023198
Description Glycine max gma-miR828b mature miRNA
Sequence 11 - UCUUGCUCAAAUGAGUAUUCCA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553