miRBase entry: gma-MIR5780a

Stem-loop gma-MIR5780a


Accession
MI0019730
Description
Glycine max gma-MIR5780a precursor miRNA
Gene family
MIPF0001918; MIR5780


Sequence

uuuuggucuggguuccuauugucaaguuaagugaugacaugacaucaucugaugacugauauauauuggaagagccguugagaugaugucacaucAUCACUUAGCUGACGGUAGGGACcuaggacaaa
.((((..(((((((((((((((((.((((((((((((..(((((((((((((((.((...............)).)))).)))))))))))..)))))))))))))))))))))))))))))..))))

Structure
u    gu                 a            ca           -    a  gauaua 
 uuug  cuggguuccuauuguca guuaagugauga  ugacaucaucu gaug cu      u
 ||||  ||||||||||||||||| ||||||||||||  ||||||||||| |||| ||      a
 aaac  gaucCAGGGAUGGCAGU CGAUUCACUAcu  acuguaguaga uugc ga      u
-    ag                 -            ac           g    c  gaaggu 


Annotation confidence Not enough data
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Genome context
chr6: 29583605-29583732 [-]

Database links

Mature gma-miR5780a

Accession MIMAT0023185
Description Glycine max gma-miR5780a mature miRNA
Sequence 96 - AUCACUUAGCUGACGGUAGGGAC - 118
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553