Stem-loop mtr-MIR5037c

Accession

MI0019698

Description

Medicago truncatula mtr-MIR5037c precursor miRNA

Gene family

MIPF0001288; MIR5037

Sequence

aaguuaaaaggaguaagcauucaguAACCCUCAAAGGCUUCCACGGcaccaaguuacauguaaaugugaagucguggaaguguuuuuggguuuccgaaggcuuuaauccuaugcauccu
........((((..((((.(((.(.(((((..(((.(((((((((((......((((((....)))))).))))))))))).)))..))))).).))).))))...)))).........

Structure

-aaguuaaa    -gu    a   a u     UC   G           accaag      g 
         agga   aagc uuc g AACCC  AAA GCUUCCACGGc      uuacau u
         ||||   |||| ||| | |||||  ||| |||||||||||      ||||||  
         uccu   uucg aag c uuggg  uuu ugaaggugcug      agugua a
uccuacgua    aau    g   c u     uu   g           -----a      a 

Annotation confidence Not enough data

Genome context

chr7: 23961112-23961230 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from mtr-MIR5037c

Mature mtr-miR5037c

• Accession: MIMAT0023153
• Description: Medicago truncatula mtr-miR5037c mature miRNA
• Sequence: 26 - AACCCUCAAAGGCUUCCACGG - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553