miRBase entry: mtr-MIR5758

Stem-loop mtr-MIR5758


Accession
MI0019689
Description
Medicago truncatula mtr-MIR5758 precursor miRNA


Sequence

aagguggauuuaguuuucaccacuaaauacauuacuccaacuuacaccaauaaaauaacccuuuguagcaacuuacacuguagucaucaugagauccaguccguuagaauaaauuuaaauauauaaaugacuuauauugaaguggugUAAGUUGGAAGAAUGUAUUUGauaguccaaacuaaacuuuacacuu
((((((((((((((((..((...((((((((((..((((((((((((((....((((.......((((....))))((((..(((.......))).))))..((((.....................))))...))))....))))))))))))))..))))))))))...))..)))))))).))))).)))

Structure
   -     -        uc  cac          ac              auaa    ---------------acccuuuguagcaacuuac    ua   au 
aag gugga uuuaguuu  ac   uaaauacauu  uccaacuuacacca    aaua                                  acug  guc  c
||| ||||| ||||||||  ||   ||||||||||  ||||||||||||||    ||||                                  ||||  |||  a
uuc cauuu aaaucaaa  ug   GUUUAUGUAA  AGGUUGAAUguggu    uuau                                  ugac  uag  u
   a     c        cc  aua          GA              gaag    auucaguaaauauauaaauuuaaauaagauugcc    -c   ag 


Annotation confidence Not enough data
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Genome context
chr6: 22625525-22625717 [+]

Database links

Mature mtr-miR5758

Accession MIMAT0023144
Description Medicago truncatula mtr-miR5758 mature miRNA
Sequence 148 - UAAGUUGGAAGAAUGUAUUUG - 168
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553