miRBase entry: mtr-MIR5744

Stem-loop mtr-MIR5744


Accession
MI0019669
Description
Medicago truncatula mtr-MIR5744 precursor miRNA


Sequence

agaguguaggUAGGUAUUUUAAGGAGCACGUUuuaacuuuagugguaaauugacccuuaaaaguuuucagaguaaaaguaguauaaguuagugugaggaauaaaaaggucaaauaaagagggucagaagaaaaaauauuuucuagggcaccauugacucuaggggguaggagccgcacuacuugacuuccuacgugaagauguugucucuaaaaauuaaacuagcuucuuuaauuccuucucacuua
.(((((.(((.(((.(((..(((((((..((((....(((((........((((((((.....((((((.(.(((............))).).))))))..................))))))))..((((((....)))))).(((((.((((..(.(((((((((..(((........))).)))))))).).)..)))).))))))))))....))))..))))))).))).))))))))))).

Structure
a     u   U   U   UU       AC    uaac     ugguaaauugacccuuaaaaguuuucagaguaaaaguaguauaaguuagugugaggaauaaaaaggucaaauaaagagggucagaagaaaaaauauuuucua     c    ga u -        ag   ccg 
 gagug agg AGG AUU  AAGGAGC  GUUu    uuuag                                                                                                      gggca cauu  c c uagggggu  gag   c
 ||||| ||| ||| |||  |||||||  ||||    |||||                                                                                                      ||||| ||||  | | ||||||||  |||    
 uucac ucu ucc uaa  uucuucg  caaa    aaauc                                                                                                      ucugu guag  g g auccuuca  uuc   a
a     -   -   u   -u       au    uuaa     ------------------------------------------------------------------------------------------------------     u    aa u c        -g   auc 


Annotation confidence Not enough data
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Genome context
chr2: 16613641-16613887 [+]

Database links

Mature mtr-miR5744

Accession MIMAT0023124
Description Medicago truncatula mtr-miR5744 mature miRNA
Sequence 11 - UAGGUAUUUUAAGGAGCACGUU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553