miRBase entry: mtr-MIR5743b

Stem-loop mtr-MIR5743b


Accession
MI0019667
Description
Medicago truncatula mtr-MIR5743b precursor miRNA
Gene family
MIPF0001572; MIR5743


Sequence

uuuuuuuggaUGAGAACUGUUUUCCGCACCUUuggcuauaaaaacaaacaaaggugggaaaacauuucucaucuaaacaau
....((((((((((((.((((((((.((((((((..............)))))))))))))))).))))))))))))....

Structure
uuuu            C        G        gcuaua 
    uuuggaUGAGAA UGUUUUCC CACCUUug      a
    |||||||||||| |||||||| ||||||||       
    aaaucuacucuu acaaaagg guggaaac      a
uaac            u        -        aaacaa 


Annotation confidence Not enough data
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Genome context
chr1: 8438755-8438835 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR5743b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5743b

Accession MIMAT0023122
Description Medicago truncatula mtr-miR5743b mature miRNA
Sequence 11 - UGAGAACUGUUUUCCGCACCUU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553