miRBase entry: mtr-MIR5742

Stem-loop mtr-MIR5742


Accession
MI0019665
Description
Medicago truncatula mtr-MIR5742 precursor miRNA


Sequence

aacgcaguuaCCACAUCAAUGGUCGUUGGAUcgagauaaaacggucuagauuucgauacaaauuuugauuuuuuuuuaagaaaaaaaacuaaaauaucaguuugaaauuucgaucauccgaucccgauccaacggucaauguugugaugacugcuug
...(((((((.((((.((.((((((((((((((.(((.....((((.(((((((((.....((((((.((((((((....)))))))).))))))......))))))))).)))).....))).)))))))))))))).)).)))).)))))))...

Structure
aac       C    U  A              a   aaaac    u         -uacaa      a        u 
   gcaguua CACA CA UGGUCGUUGGAUcg gau     gguc agauuucga      auuuug uuuuuuuu a
   ||||||| |||| || |||||||||||||| |||     |||| |||||||||      |||||| ||||||||  
   cgucagu gugu gu acuggcaaccuagc cua     cuag uuuaaaguu      uaaaau aaaaaaaa a
guu       a    u  a              c   gccua    c         ugacua      c        g 


Annotation confidence Not enough data
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Genome context
chr1: 7023238-7023394 [-]

Database links

Mature mtr-miR5742

Accession MIMAT0023120
Description Medicago truncatula mtr-miR5742 mature miRNA
Sequence 11 - CCACAUCAAUGGUCGUUGGAU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553