miRBase entry: sha-mir-92a

Stem-loop sha-mir-92a


Accession
MI0019661
Description
Sarcophilus harrisii sha-mir-92a precursor miRNA
Gene family
MIPF0000138; mir-363


Sequence

uguugcauuacuugaucuugugucuguaagagUAUUGCACUUGUCCCGGCcuguggaggaaaagaggacuuaucgucaguuccugucaggaucgaaaaggggccgagcuggcugguuugcuguugucggguggaucacgaugcaauuuug
.((((((((...((((((....(((((((.((((..((.((((((((..((((.(.(((((..((.((....)).))..))))).)))))........)))).))))...)).....)))).))).)))).)))))).))))))))....

Structure
---u        acu      ugug    -   g    ---UU  --A    -    ------GG    u g     aa  g  c 
    guugcauu   ugaucu    ucug uaa agUA     GC   CUUG UCCC        Ccug g aggaa  ga ga u
    ||||||||   ||||||    |||| ||| ||||     ||   |||| ||||        |||| | |||||  || ||  
    uaacguag   acuagg    gggc guu ucgu     cg   gagc gggg        ggac u uccuu  cu cu u
guuu        --c      ---u    u   g    uuggu  guc    c    aaaagcua    - g     ga  g  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature sha-miR-92a

Accession MIMAT0022832
Description Sarcophilus harrisii sha-miR-92a mature miRNA
Sequence 33 - UAUUGCACUUGUCCCGGC - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87