Stem-loop sha-mir-130a

Accession

MI0019659

Description

Sarcophilus harrisii sha-mir-130a precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

auauagaauaagagaggagaaauccaccagaagcaagccagcuuuccacuccuggccggggcucuuuucacauugugcuacugucugcaccugucacuagCAGUGCAAUGUAAAAAGGGCAuuggccgggcaguacccaccugcaccggc
...............(((....)))....(((((......)))))..((((((((((((.((((((((.((((((((((.(((...((....))...))).)))))))))).)))))))).))))))))).))).....((......)).

Structure

auauagaauaagagaggagaaauccaccagaagcaagccagcuuucc   -         g        c          a   ucu  a 
                                               acu ccuggccgg gcucuuuu acauugugcu cug   gc c
                                               ||| ||||||||| |||||||| |||||||||| |||   ||  
                                               uga gggccgguu CGGGAAAA UGUAACGUGA gau   ug c
-------------------------------cggccacguccaccca   c         A        A          C   cac  u 

Annotation confidence Not enough data

Genome context

GL864900.1: 1865338-1865487 [+]

Mature sha-miR-130a

• Accession: MIMAT0022830
• Description: Sarcophilus harrisii sha-miR-130a mature miRNA
• Sequence: 101 - CAGUGCAAUGUAAAAAGGGCA - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87