Stem-loop sha-mir-383

Accession

MI0019658

Description

Sarcophilus harrisii sha-mir-383 precursor miRNA

Gene family

MIPF0000137; mir-383

Sequence

acagcagaagcuccaaagucaccugcuccuCAGAUCAGAAGGUGAUUGUGGCuuugggcagacauggaacagccacaucacuggcuggucagaaagagcaaguguccuagccuugggccucacgggaccuuggguuugcaaccagcugga
.((((..((((.((((.(((.(((((((.((.((((((..((((((.((((((.....((....))....))))))))))))..)))))).))..)))))((.((((.......))))))...))))).)))))))).......))))..

Structure

-a    -----ag    u    a   a  -----------------------     -c  A      AA      U      uuggg  g 
  cagc       aagc ccaa guc cc                       ugcuc  uC GAUCAG  GGUGAU GUGGCu     ca a
  ||||       |||| |||| ||| ||                       |||||  || ||||||  |||||| ||||||     ||  
  gucg       uuug gguu cag gg                       acgag  ag cugguc  ucacua caccga     gu c
ag    accaacg    -    c   -  cacuccggguuccgauccuguga     aa  a      gg      -      -caag  a 

Annotation confidence Not enough data

Genome context

GL864737.1: 2362136-2362285 [+]

Mature sha-miR-383

• Accession: MIMAT0022829
• Description: Sarcophilus harrisii sha-miR-383 mature miRNA
• Sequence: 31 - CAGAUCAGAAGGUGAUUGUGGC - 52
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87