Stem-loop sha-mir-26a

Accession

MI0019657

Description

Sarcophilus harrisii sha-mir-26a precursor miRNA

Gene family

MIPF0000043; mir-26

Literature search

1 open access papers mention sha-mir-26a
(5 sentences)

Sequence

auccaggauaggcuguguccagcugcaggCCUAUUCUUGAUUACUUGUUUcuggaggcagcugacugcacccugccagaagcaaguauuccaagacauuccccuagugcuugcccaccauguuuucauuuucuacccugggccauggaau
.((((((.(((((((....)))).(((((((((.((((((.((((((((((((((((..((.....))..))).))))))))))))).).)))))........))).)))))).....(((....)))...))).)))))).........

Structure

--------a      a   -----gcuguguccagcu      -   -------U     - U             -   ca  u 
         uccagg uag                  gcaggC CUA        UCUUG A UACUUGUUUcugg agg  gc g
         |||||| |||                  |||||| |||        ||||| | ||||||||||||| |||  || a
         gggucc auc                  cguucg gau        agaac u augaacgaagacc ucc  cg c
uaagguacc      c   uuuuacuuuuguaccacc      u   ccccuuac     c u             g   ca  u 

Annotation confidence Not enough data

Genome context

GL861726.1: 614962-615111 [-]

Mature sha-miR-26a

• Accession: MIMAT0022828
• Description: Sarcophilus harrisii sha-miR-26a mature miRNA
• Sequence: 30 - CCUAUUCUUGAUUACUUGUUU - 50
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87