Stem-loop sha-mir-138-2

Accession

MI0019656

Description

Sarcophilus harrisii sha-mir-138-2 precursor miRNA

Gene family

MIPF0000075; mir-138

Sequence

acucaggccuaacacgcguucucugucucugccccacuugccccccagaagcagccacgguccggccuccgcccuggcacccgcccggcccgguguggcAGCUGGUGUUGUGAAUCAGGCCGucgccagucugagaacggcuacuucaca
.(((((((.....(((.((...(((..((.((..((((...........(((.((((((..((((.....(((..(((....))).))))))))))))).)))))))..))))..)))))))).....)))))))...............

Structure

--------------a       cuaac   c  ucu   uc  u  cc    ugccccccaga   a      gu    ccucc   cu   a 
               cucaggc     acg gu   cug  uc gc  cacu           agc gccacg  ccgg     gcc  ggc c
               |||||||     ||| ||   |||  || ||  ||||           ||| ||||||  ||||     |||  |||  
               gagucug     uGC CG   GAC  AG UG  GUGG           UCG cggugu  ggcc     cgg  ccg c
acacuucaucggcaa       accgc   -  ---   UA  -  UU    -----------   A      --    -----   -c   c 

Annotation confidence Not enough data

Genome context

GL861705.1: 3033995-3034144 [-]

Mature sha-miR-138

• Accession: MIMAT0022771
• Description: Sarcophilus harrisii sha-miR-138 mature miRNA
• Sequence: 100 - AGCUGGUGUUGUGAAUCAGGCCG - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87