Stem-loop sha-mir-129

Accession

MI0019655

Description

Sarcophilus harrisii sha-mir-129 precursor miRNA

Gene family

MIPF0000073; mir-129

Sequence

ucuccuaccuggccucugccuccuuuggauCUUUUUGCGGUCUGGGCUUGCuguucuaaucaauagucaggaagcccuuaccccaaaaaguaucuacagggggcccugucaacgggagugacugccugaggauuucagguaagcaacaaa
.(((((...((((....(((((((.((((((((((((.(((..((((((.(((..(((.....))).))).))))))..))).))))))).))))).)))))))...))))..)))))((..(((((((.....)))))))..)).....

Structure

-------------------------------u     acc    cucu       u     -       C   CU      G   uu   a 
                                cuccu   uggc    gccuccu uggau CUUUUUG GGU  GGGCUU Cug  cua u
                                |||||   ||||    ||||||| ||||| ||||||| |||  |||||| |||  ||| c
                                gaggg   acug    cggggga aucua gaaaaac cca  cccgaa gac  gau a
aaacaacgaauggacuuuaggaguccgucagu     -ca    -ucc       c     u       c   uu      g   -u   a 

Annotation confidence Not enough data

Genome context

GL861653.1: 2316521-2316670 [+]

Mature sha-miR-129

• Accession: MIMAT0022827
• Description: Sarcophilus harrisii sha-miR-129 mature miRNA
• Sequence: 31 - CUUUUUGCGGUCUGGGCUUGC - 51
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87