miRBase entry: sha-mir-135a

Stem-loop sha-mir-135a


Accession
MI0019651
Description
Sarcophilus harrisii sha-mir-135a precursor miRNA
Gene family
MIPF0000028; mir-135


Sequence

uccggucaagauaaauucacucuagugucuUAUGGCUUUUUAUUCCUAUgugauaguaauaaagucucauguagggauggaagccaugaaauacauugugaaaugucaucaacuaagauggggccaucaguauagaaaacauccuaguug
.........((((..(((((....((((.(((((((((((.((((((((((((.(.(.....).).))))))))))))))))))))))).))))...))))).))))..((((((.((((...................)))).))))))

Structure
----------------------------------uccggucaa    aa     ucua    c           U            u g a 
                                           gaua  uucac    gugu uUAUGGCUUUU AUUCCUAUguga a u a
                                           ||||  |||||    |||| ||||||||||| |||||||||||| | | u
                                           cugu  aagug    caua aguaccgaagg uagggauguacu u a a
guugauccuacaaaagauaugacuaccgggguagaaucaacua    -a     -uua    a           -            c g a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL861598.1: 2879559-2879708 [+]

Database links

Mature sha-miR-135a

Accession MIMAT0022823
Description Sarcophilus harrisii sha-miR-135a mature miRNA
Sequence 31 - UAUGGCUUUUUAUUCCUAU - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87