miRBase entry: sha-let-7i

Stem-loop sha-let-7i

Accession

MI0019650

Description

Sarcophilus harrisii sha-let-7i precursor miRNA

Gene family

MIPF0000002; let-7

Literature search

1 open access papers mention sha-let-7i
(1 sentences)

Sequence

ccgcuccagcguccgcaccauggcccuggcUGAGGUAGUAGUUUGUGCUGUuggucggguugugacauugcccgcuguggagauaacugcgcaagcuacugccuugcuagugcuggugaugaucagccgcgggugaagacaauggcccgg
(((..(((..(((..((((...((.(((((.(((((((((((((((((.(((((.(((((.........)))))))........))).)))))))))))))))))))))).((((((....)))))).)).))))..)))..)))..)))

Structure

   cu   gc   cg    aug  -----------------c     U                 U   --------  u     ugu 
ccg  cca  guc  cacc   gc                  cuggc GAGGUAGUAGUUUGUGC GUu        gg cgggu   g
|||  |||  |||  ||||   ||                  ||||| ||||||||||||||||| |||        || |||||   a
ggc  ggu  cag  gugg   cg                  gaucg uuccgucaucgaacgcg caa        uc gcccg   c
   cc   aa   aa    --g  ccgacuaguaguggucgu     -                 u   uagaggug  -     uua

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

GL861550.1: 1519507-1519656 [+]

Database links

Mature sha-let-7i

Accession	MIMAT0022822
Description	Sarcophilus harrisii sha-let-7i mature miRNA
Sequence	31 - UGAGGUAGUAGUUUGUGCUGU - 51
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87