miRBase entry: sha-mir-497

Stem-loop sha-mir-497


Accession
MI0019649
Description
Sarcophilus harrisii sha-mir-497 precursor miRNA
Gene family
MIPF0000231; mir-497


Sequence

cuacucccaaaucccauccugccuccgcccCAGCAGCACACUGUGGUUUGUucaguguuguggccaaguccaaaccacacugugguguuagagugaggguaaggaaggcaucacugccaccaccacagcuuggaccuggagcaggacacc
((.((((....(((..((((((((.(((.(.((((.((((.(((((((((..(.((......))...)..))))))))).)))).)))).).))).)))).)))).((((....)))).............)))...)))).))......

Structure
------  a    caaa   ------------------------ca    -    c   c C    G    C         Uu --a  gu 
      cu cucc    ucc                          uccu gccu cgc c AGCA CACA UGUGGUUUG  c   gu  u
      || ||||    |||                          |||| |||| ||| | |||| |||| |||||||||  |   ||   
      ga gagg    agg                          agga uggg gug g uugu gugu acaccaaac  g   cg  g
ccacag  c    -ucc   uucgacaccaccaccgucacuacgga    a    a   a a    g    c         cu aac  gu 


Annotation confidence Not enough data
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Genome context
GL858641.1: 5112-5261 [+]

Database links

Mature sha-miR-497

Accession MIMAT0022821
Description Sarcophilus harrisii sha-miR-497 mature miRNA
Sequence 31 - CAGCAGCACACUGUGGUUUGU - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87