Stem-loop sha-mir-10a

Accession

MI0019645

Description

Sarcophilus harrisii sha-mir-10a precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

1 open access papers mention sha-mir-10a
(1 sentences)

Sequence

ccaaucacuauuccccccccccccucaauccacgaagacugugcucagaguaaacgaacugaaggauuuguaugccaagaagaucucucugucuucuguauaUACCCUGUAGAUCCGAAUuuguguaaggaauuuuguggucacaaauuc
.............................((((((((.((.(((.((((......((.(((.(((...(((((((..(((((((......)))))))))))))).))).))).))....)))).))).))..))))))))..........

Structure

ccaaucacuauuccccccccccccucaau        -a  g   u    guaaac  a   a   auu       ca       cu 
                             ccacgaag  cu ugc caga      ga cug agg   uguaugc  agaagau  c
                             ||||||||  || ||| ||||      || ||| |||   |||||||  |||||||   
                             gguguuuu  gg aug guuU      CU GAU UCC   AUauaug  ucuucug  u
-------------------cuuaaacacu        aa  a   u    --AAGC  A   G   --C       --       uc 

Annotation confidence Not enough data

Genome context

GL856828.1: 1035029-1035178 [-]

Mature sha-miR-10a

• Accession: MIMAT0022817
• Description: Sarcophilus harrisii sha-miR-10a mature miRNA
• Sequence: 103 - UACCCUGUAGAUCCGAAU - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87