Stem-loop sha-mir-454

Accession

MI0019643

Description

Sarcophilus harrisii sha-mir-454 precursor miRNA

Gene family

MIPF0000174; mir-454

Sequence

uugaguuuccuacuguguaauuuaaaaauacauuuccuguugauacuaccagauccuagaacccuaucgauauugucucugcuguguacauagcugugagUAGUGCAAUAUUGCUUAUAGGGUuuuaguguuuggaaagaacaguggcca
.........((((((((((.........))).................((((((.(((((((((((((((((((((..(((((...((((....))))))))).)))))))))...)))))))))))).)))))).....)))))))...

Structure

uugaguuuc       guaauuuaaaaauacauuuccuguugauacua      c            ---         cu     gug    u 
         cuacugu                                ccagau cuagaacccuau   cgauauugu  cugcu   uaca a
         |||||||                                |||||| ||||||||||||   |||||||||  |||||   ||||  
         ggugaca                                gguuug gauuuUGGGAUA   GUUAUAACG  GAUga   gugu g
------acc       ---------------------------agaaa      u            UUC         -U     ---    c 

Annotation confidence Not enough data

Genome context

GL856812.1: 2872454-2872603 [+]

Mature sha-miR-454

• Accession: MIMAT0022815
• Description: Sarcophilus harrisii sha-miR-454 mature miRNA
• Sequence: 101 - UAGUGCAAUAUUGCUUAUAGGGU - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87