Stem-loop sha-mir-130b

Accession

MI0019642

Description

Sarcophilus harrisii sha-mir-130b precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

aucuauuuuuucuuuaguaugauuggacaucuuauugacugagugguauuugucuagugcccuuuuuauguuguacuacuagugauccugcacaagaagcAGUGCAAUGUUAAAAGGGCAUuggccagugauaccggucacauuucuggg
.............((((((.(((.....))).)))))).(((.(((((((((.(((((((((((((.((((((((((.((.(((......)))....)).)))))))))).))))))))))))).))..))))))).)))..........

Structure

aucuauuuuuucuuuaguaugauuggacaucuuauugac   g       --  u             u          a  ---a   au 
                                       uga ugguauu  ug cuagugcccuuuu auguuguacu cu    gug  c
                                       ||| |||||||  || ||||||||||||| |||||||||| ||    |||   
                                       acu gccauag  ac gguUACGGGAAAA UGUAACGUGA ga    cac  c
-----------------------------gggucuuuac   g       ug  c             U          c  agaa   gu 

Annotation confidence Not enough data

Genome context

GL856812.1: 2852938-2853087 [+]

Mature sha-miR-130b

• Accession: MIMAT0022814
• Description: Sarcophilus harrisii sha-miR-130b mature miRNA
• Sequence: 101 - AGUGCAAUGUUAAAAGGGCAU - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87